Publications
Akira Nishimura, Ryoya Tanahashi, Kazuki Nakagami, Yuto Morioka, Hiroshi Takagi. 2023. Identification of an arginine transporter in Candida glabrata. Journal of Eukaryotic Microbiology, in press.
Akira Nishimura, Ryoya Tanahashi, Tomoki Oi, Kyoyuki Kan, Hiroshi Takagi. 2023. Plasmid-free CRISPR/Cas9 genome editing in Saccharomyces cerevisiae. Bioscience, Biotechnology, and Biochemistry, 87, 458-462.
Sota Kudo, Zheng Chen, Xue Zhou, Leighton Izu, Ye Chen-Izu, Xin Zhu, Toshiyo Tamura, Shigehiko Kanaya, Ming Huang. 2023. A training pipeline of arrhythmia classifier for AF detection with PPG signal. Frontiers in Physiology, 14, 1084837.
Ryoya Tanahashi, Akira Nishimura, Minh Nguyen, Irnayuli Sitepu, Glen Fox, Kyria Boundy-Mills, Hiroshi Takagi. 2023. Large-scale screening of yeast strains that can utilize proline. Bioscience Biotechnology and Biochemistry, 87, 358-362.
Ryoya Tanahashi, Akira Nishimura, Fumika Morita, Hayate Nakazawa, Atsuki Taniguchi, Kazuki Ichikawa, Kazuki Nakagami, Kyria Boundy-Mills, Hiroshi Takagi. 2023. The arginine transporter Can1 acts as a transceptor for regulation of proline utilization in the yeast Saccharomyces cerevisiae. Yeast, in press. DOI: 10.1002/yea.3836
高木博史, 磯貝章太, 西村 明. 2022. 「アミノ酸機能工学」による酵母の高機能開発とその産業応用. 科学と工業, 96, 57-66.
高木博史. 2022. 機能性アミノ酸高含有酵母の育種技術を活用した発酵・醸造食品の高付加価値化. 食品と開発, 57, 4-9.
Akira Nishimura, Yurie Takasaki, Shota Isogai, Yoichi Toyokawa, Ryoya Tanahashi, Hiroshi Takagi. 2021. Role of Gln79 in feedback inhibition of the yeast γ-glutamyl kinase by proline. Microorganisms, 9, 1902.
Zheng Chen, Naoaki Ono, Wei Chen, Toshiyo Tamura, MD Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang. 2021. The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals. Computer Methods and Programs in Biomedicine, 205, 106102.
Akira Nishimura, Kazuki Ichikawa, Hayate Nakazawa, Ryoya Tanahashi, Fumika Morita, Irnayuli Sitepu, Kyria Boundy-Mills, Glen Fox, Hiroshi Takagi. 2022. The Cdc25/Ras/cAMP-dependent protein kinase A signaling pathway regulates proline utilization in wine yeast Saccharomyces cerevisiae under a wine fermentation mode. Bioscience Biotechnology and Biochemistry, 86, 1318-1326.
Jieying Hu, Ming Huang, Naoaki Ono, Ye Chen-Izu, Leighton T. Izu, Shigehiko Kanaya. 2019. Cardiotoxicity prediction based on integreted hERG database with molecular convolution model. 2019 IEEE International Conference on Bioinformatics and Biomedicine, 1500-1503.
Ryohei Eguchi, Naoaki Ono, Aki Hirai Morita, Tetsuo Katsuragi, Satoshi Nakamura, Ming Huang, Md. Altaf-Ul-Amin, Shigehiko Kanaya. 2019. Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks. BMC Bioinformatics, 20, 380.
小野直亮, 齋藤朗, 黄銘, Md.Altaf-Ul-Amin, 金谷重彦. 2019. 深層学習による肺癌組織画像の特徴抽出と遺伝子発現パターンとの相関解析. THE LUNG perspectives, 27, 235-238.
Mohammad Bozlul Karim, Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. Altaf-Ul-Amin. 2019. BiClusO: A novel biclustering approach and its application to species-VOC relational data. IEEE Transactions on Computational Biology and Bioinformatics, 17, 1955-1965.
Koshiro Kido, Toshiyo Tamura, Naoaki Ono, MD. Altuf-Ul-Amin, Masaki Sekine, Shigehiko Kanaya, Ming Huang. 2019. A novel CNN-based framework for classification of signal quality and sleep position from a capacitive ECG measurement. Sensors, 19, 1731.
黄銘. 2018. 深層学習による心筋細胞膜のhERGチャンネルに対する化合物の遮断作用の予測. 日本化学会情報化学部会誌, 36, 31-34.
Ryohei Eguchi, Naoaki Ono, Hisayuki Horai, MD. Altuf-Ul-Amin, Aki Morita Hirai, Jun Kawahara, Shoji Kasahara, Tomoaki Endo, Shigehiko Kanaya. 2017. Classification of alkaloid compounds based on subring skeleton (SRS) profiling: on finding relationship of compounds with metabolic pathways. Journal of Computer Aided Chemistry, 18, 58-75.
Koji Sakamori, Naoaki Ono, Makoto Ihara, Hideyuki Suzuki, Hideyuki Matsuura, Ken Tanaka, Daisaku Ohta, Shigehiko Kanaya, Kazuhiko Matsuda. 2016. Selective regulation of pyrethrin biosynthesis by the specific blend of wound induced volatiles in Tanacetum cinerariifolium. Plant Signaling & Behavior, 11, e1149675.
Nelson Kibinge, Naoaki Ono, Masafumi Horie, Tetsuo Sato, Tadao Sugiura, MD. Altaf-Ul-Amin, Akira Saito, Shigehiko Kanaya. 2016. Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles. Journal of Biomedical Informatics, 61, 194-202.
Sony Hartono Wijaya, Yuki Tanaka, MD. Altaf-Ul-Amin, Aki Hirai Morita, Farit Mochamad Afendi, Irmanida Batubara, Naoaki Ono, Latifah K. Darusman, Shigehiko Kanaya. 2016. Utilization of KNApSAcK family databases for developing herbal medicine systems. 2016. Journal of Computer Aided Chemistry, 17, 1-7.
Azian Azamimi Abdullah, MD. Altaf-Ul-Amin, Naoaki Ono, Nurlisa Yusuf, Ammar Zakaria, Takaaki Nishioka, Shigehiko Kanaya. 2016. Comparison of clustering methods in the context of chemical structure similarity based classification of VOCs. Procedia Chemistry, 20, 40-44.